Alvin Sanjaya, Ryo Nishijima, Yuki Fujii, Makoto Asano, Kotaro Ishii, Yusuke Kazama, Tomoko Abe, Makoto T Fujiwara: Rare occurrence of cryptic 5’ splice sites by downstream 3’ splice site/exon boundary mutations in a heavy-ion-induced egy1-4 allele of Arabidopsis thaliana. Frontiers in Plant Sciencel. 2024; 15, 1388040; DOI:10.3389/fpls.2024.1388040
Anika Minovic, Masafumi Nozawa, Evolution of sex-biased genes in Drosophila species with neo-sex chromosomes: Potential contribution to reducing the sexual conflict. Ecology and Evolution. 2024; 14 e11701; DOI:10.1002/ece3.11701
Shun Hayashi, Takuya Abe, Takeshi Igawa, Yukako Katsura, Yusuke Kazama, Masafumi Nozawa, Sex chromosome cycle as a mechanism of stable sex determination. Journal of Biochemistry. 2024; 176, 81-95. DOI: 10.1093/jb/mvae045
Junji Konuma, Tomochika Fujisawa, Tomoaki Nishiyama, Masahiro Kasahara, Tomoko F Shibata, Masafumi Nozawa, Shuji Shigenobu, Atsushi Toyoda, Mitsuyasu Hasebe, Teiji Sota, Odd-paired is involved in morphological divergence of snail-feeding beetles. Mol. Biol. Evol. In Press; DOI: 10.1093/molbev/msae110
Priambodo B, Shiraga K, Harada I, Ogino H, Igawa T, Long-term heat tolerance and accelerated metamorphosis: Hot spring adaptations of Buergeria japonica. Zoological Science, 41 (in press). 10.2108/zs240011
Makoto T Fujiwara, Yasushi Yoshioka, Yusuke Kazama, Tomonari Hirano, Yasuo Niwa, Takashi Moriyama, Naoki Sato, Tomoko Abe, Shigeo Yoshida, Ryuuichi D Itoh, Principles of amyloplast replication in the ovule integuments of Arabidopsis thaliana, Plant Physiology, 2024; kiae314. DOI: 10.1093/plphys/kiae314
Kiyo Sakagami, Takeshi Igawa, Kaori Saikawa, Yusuke Sakaguchi, Nusrat Hossain, Chiho Kato, Kazuhito Kinemori, Nanoka Suzuki, Makoto Suzuki, Akane Kawaguchi, Haruki Ochi, Yuki Tajika, & Hajime Ogino, Development of a heat-stable alkaline phosphatase reporter system for cis-regulatory analysis and its application to 3D digital imaging of Xenopus embryonic tissues. Development, Growth & Differentiation 2024; DOI: 10.1111/dgd.12919
Kotaro Ishii, Yusuke Kazama, Tomonari Hirano, Jeffray A. Fawcett, Muneo Sato, Masami Yokota Hirai, Fujiko Sakai, Yuki Shirakawa, Sumie Ohbu, & Tomoko Abe, Genomic view of heavy-ion-induced deletions associated with distribution of essential genes in Arabidopsis thaliana. Frontiers in Plant Science, 2024; 15, 1352564. https://doi.org/10.3389/fpls.2024.1352564
Masafumi Ogawa, Kazuhide Tsuneizumi, Tomoko Abe & Masafumi Nozawa, Testing immediate dosage compensation in Drosophila miranda via irradiation with heavy-ion beams, Genes and Genetic Systems, 2023; 98, 201-206. DOI: 10.1266/ggs.23-00100
Kaisa Thorell, Zilia Y. Muñoz-Ramírez, Difei Wang, Santiago Sandoval-Motta, Rajiv Boscolo Agostini, Silvia Ghirotto, Roberto C. Torres, HpGP Research Network (Yukako Katsura), Daniel Falush, M. Constanza Camargo & Charles S. Rabkin, The Helicobacter pylori Genome Project: insights into H. pylori population structure from analysis of a worldwide collection of complete genomes, Nature Communications, 2023; 14, 8184, DOI: 10.1038/s41467-023-43562-y
Asaeda Y, Shiraga K, Suzuki M, Sambongi Y, Ogino H, Igawa T, Rapid and collective determination of the complete “hot-spring frog” mitochondrial genome containing long repeat regions using Nanopore sequencing. PLoS One 18: e0280090 October 2023 10.1371/journal.pone.0280090
Alvin Sanjaya, Taiki Kobayashi, Ryo Nishijima, Harue Shinoyama & Yusuke Kazama, Developmental differences between hermaphrodite and female-like flowers in a non-model horticultural plant Dianthus hybrida, Cytologia, 2023; 89, 265-272. https://doi.org/10.1508/cytologia.88.265
風間班 ナデシコの両生花の雌花と違いに関する論文を発表しました。
2023年10月1日
Ivan Psakhye, Ryotaro Kawasumi, Takuya Abe, Kouji Hirota & Dana Branzei, PCNA recruits cohesin loader Scc2 to ensure sister chromatid cohesion, Nature Structure and Molecular Biology, 2023; https://doi.org/10.1038/s41594-023-01064-x
Taiki Kobayashi, Moe Kitoh, Shigeyuki Kawano, Yusuke Kazama. Treatment of Silene latifolia flower buds with peptides containing gynoecium-suppressing functions, Cytologia, 2023; 88, 89-89. https://doi.org/10.1508/cytologia.88.89
Jingjing Yue, Marc Krasovec, Yusuke Kazama, Xingtan Zhang, Wangyang Xie, Shencheng Zhang, Xiuming Xu, Baolin Kan, Ray Ming, Dmitry A. Filatov, The origin and evolution of sex chromosomes, revealed by sequencing of the Silene latifolia female genome, Current Biology, 2023; 33, 1–11, https://doi.org/10.1016/j.cub.2023.05.046
Junpei Ueda, Yusuke Kazama, Tomoko Abe, Koji Murai, Characterization of late heading 1, a Heavy-Ion Beam Irradiation-Induced Mutant in Einkorn Wheat (Triticum monococcum) that Suppresses an Early-Flowering Phenotype in Plants with Deletion of PHYTOCLOCK 1. Cytologia, 2023; 88, 61-67, 10.1508/cytologia.88.61
Ogino H, Kamei Y, Hayashi T, Sakamoto J, Suzuki M, Igawa T, Kondo M, Taira M, Invention sharing is the mother of developmental biology (part 4). Development Growth & Differentiation 65: 286-287 August 2023. 10.1111/dgd.12883
Kitamura K, Yamamoto T, Ochi H, Suzuki M, Suzuki N, Igawa T, Yoshida T, Futakuchi M, Ogino H, Michiue T, Identification of tumor-related genes via RNA sequencing of tumor tissues in Xenopus tropicalis. Scientific Reports 13: 13214 August 2023. 10.1038/s41598-023-40193-7
Hossain N, Igawa T, Suzuki M, Tazawa I, Nakao Y, Hayashi T, Suzuki N, Ogino H, Phenotype-genotype relationships in Xenopus sox9 crispants provide insights into campomelic dysplasia and vertebrate jaw evolution. Development Growth & Differentiation 65: 481-497 July 2023. 10.1111/dgd.12884
Lau Q, Igawa T, Kosch TA, Dharmayanthi AB, Berger L, Skerratt LF, Satta Y, Conserved evolution of MHC supertypes among Japanese frogs suggests selection for Bd resistance. Animals 13: 2121 June 2023. 10.3390/ani13132121
Tomoyo Iizuka, Masafumi Nozawa, Kazuho Ikeo, Direct link between convergent evolution at sequence level and phenotypic level of septal pore cap in Agaricomycotina. bioRxiv, 2023; DOI: 10.1101/2023.03.02.530715
Daiki Ikemoto, Tomoya Taniguchi, Kouji Hirota, Kiyoshi Nishikawa, Kan Okubo, Takuya Abe, Application of neural network‑based image analysis to detect sister chromatid cohesion defects, Scientific Reports, 2023; 13, 2133, https://doi.org/10.1038/s41598-023-28742-6
Ryo Nishijima, Alvin Sanjaya, Harue Shinoyama, Yusuke Kazama, Touch-Induced transcriptional changes in flower buds of a non-model horticultural plant Dianthus hybrida, Horticulturae, 2022; 8, 918, https://doi.org/10.3390/horticulturae8100918
風間班のナデシコの論文がHoriticulturae誌に掲載されました。
2022年10月11日
Yusuke Kazama, Moe Kitoh, Taiki Kobayashi, Kotaro Ishii, Marc Krasovec, Yasuo Yasui, Tomoko Abe, Shigeyuki Kawano, Dmitry A Filatov, A CLAVATA3-like gene acts as a gynoecium suppression function in White Campion, Molecular Biology and Evolution, 2022; msac195, 10.1093/molbev/msac195
Hasan M, Kurniawan N, Soewondo A, Nalley WMM, Matsui M, Igawa T, Sumida M, Postmating isolation and evolutionary relationships among Fejervarya species from Lesser Sunda, Indonesia and other Asian countries revealed by crossing experiments and mtDNA Cytb sequence analyses. Ecology and Evolution e9436 October 2022. 10.1002/ece3.9436
Ogata S, Doi H, Igawa T, Komaki S, *Takahara T, Environmental DNA methods for detecting two invasive alien species (American bullfrog and red swamp crayfish) in Japanese ponds. Ecology Research 37: 701-710 Nov 2022 10.1111/1440-1703.12341
Fujii S, Somei K, Asaeda Y, Igawa T, Hattori K, Yoshida T, *Sambongi Y, Heterologous expression and biochemical comparison of two homologous SoxX proteins of endosymbiontic Candidatus Vesicomyosocius okutanii and free-living Hydrogenovibrio crunogenus from deep-sea environments. Protein Expression and Purification 200: 106157 August 2022. 10.1016/j.pep.2022.106157
Saito S, Saito CT, Igawa T, Takeda N, Komaki S, Ohta T, Tominaga M, Evolutionary tuning of TRPA1 underlies the variation in heat avoidance behaviors among frog species inhabiting diverse thermal niches. Molecular Biology and Evolution 39: msac180 August 2022. 10.1093/molbev/msac180
Miura I, Shams F, Jeffries DL, Katsura Y, Mawaribuchi S, Perrin N, Ito M, Ogata M, Ezaz T. Identification of ancestral sex chromosomes in the frog Glandirana rugosa bearing XX-XY and ZZ-ZW sex-determining systems. Molecular Ecology. 31(14):3859-3870. 2022. 10.1111/mec.16551
Sayaka Hayashi, Shimizu Konami, Honda Yusuke, Katsura Yukako, Koga Akihiko. An endogenous retrovirus presumed to have been endogenized or relocated recently in a marsupial, the red-necked wallaby, Genome, 2022; 65, 277-286, DOI: 10.1139/gen-2021-0047
Yoshimi T, Fujii S, Oki H, Igawa T, Adams HR, Ueda K, Kawahara K, Ohkubo T, Hough MA, Sambongi Y, Crystal structure of thermally stable homodimeric cytochrome c’-beta from Thermus thermophilus. Acta Crystallographica Section F 78: 217-225 May 2022. 10.1107/S2053230X22005088
Tanouchi M, Igawa T, Suzuki N, Suzuki M, Hossain N, Ochi H, Ogino H, Optimization of CRISPR/Cas9-mediated gene disruption in Xenopus laevis using a phenotypic image analysis technique. Development Growth and Differentiation 64: 219-225 May 2022. 10.1111/dgd.12778
Uemasu H, Ikuta H, Igawa T, Suzuki M, Kyakuno M, Iwata Y, Tazawa I, Ogino H, Satoh Y, Takeuchi T, Namba N, Hayashi T, Cryo-injury procedure-induced cardiac regeneration shows unique gene expression profiles in the newt Pleurodeles waltl. Developmental Dynamics 251: 864-876 May 2022. doi.org/10.1002/dvdy.450
総説その他
Jody Aya Nagasawa, Masafumi Ogawa, Kazuhide Tsuneizumi, Tomoko Abe, Masafumi Nozawa, Effects of heavy-ion beam irradiation on non-model fruit fly, Drosophila miranda: part II. Inducing large deletions to males. RIKEN Accelerator Progress Report. In Press
Masafumi Ogawa, Kazuhide Tsuneizumi, Tomoko Abe, Masafumi Nozawa. Effects of heavy-ion beam irradiation on non-model fruit fly, Drosophila miranda. RIKEN Accelerator Progress Report, 2023; 56, 200 https://www.nishina.riken.jp/researcher/APR/APR056/pdf/200.pdf
Yusuke Kazama, Moe Kitoh, Taiki Kobayashi, K. Ishii, M. Krasovec, Y. Yasui, Tomoko Abe, Dmitry A. Filatov. Identification of a sex determining gene in a dioecious plant Silene latifolia. RIKEN Accelerator Progress Report, 2023; 56, S39 https://www.nishina.riken.jp/researcher/APR/APR056/pdf/S39.pdf
阿部知子, 風間裕介, 平野智也「重イオンビームによる育種技術の開発」育種学研究, 2023; 論文ID: 23J13
風間班 風間班員が分担執筆した重イオンビーム育種技術に関する総説が育種学研究に掲載されました。
2023年10月29日
Yusuke Kazama, Taiki Kobayashi, Dmitry A. Filatov. Evolution of sex-determination in dioecious plants: From active Y to X/A balance? BioEssays, https://doi.org/10.1002/bies.202300111
風間班 植物の性決定機構の進化に関する新説を発表
2023年9月13日
阿部拓也, 川澄遼太郎, 廣田耕志「DNA損傷と染色体異数化」放射線生物研究, 2023; 58, 110-127
Taiki Kobayashi, Moe Kitoh, Dmitry A. Filatov, Yusuke Kazama. Evolution of sex chromosomes and gynoecium suppression in plants, Cytologia, 2023; 88, 91-94, DOI: 10.1508/cytologia.88.91
風間裕介, 畑下昌範, 木元久, 櫻井明彦「イオンビームを用いた微生物の品種改良」月刊アグリバイオ, 2022; 6, 29-33
風間班の和文総説がアグリバイオ 11月号に掲載されました。
2022年10月25日
野澤 昌文「性染色体進化の新モデル」実験医学, 2022; 40, 1417-1418